UnitLevel 3Undergraduate

GEN3040 Genomics and its applications

Faculty of Science

GEN3040 Genomics and its applications is a level 3, 6-credit-point, undergraduate unit from the Faculty of Science, offered in 2020 in Semester 1 and Semester 2 at Clayton and Malaysia. It has no prerequisites.

Credit points
6
Offered in 2020
Semester 1, Semester 2
Clayton, Malaysia
Assessment
Exam 45%
and 4 other tasks

This is the 2020 handbook entry. See the 2027 entry.

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Requisites

Before GEN3040

No prerequisites or corequisites besides the enrolment rules below.

After GEN3040

No unit lists GEN3040 as a prerequisite in the 2020 handbook.

Enrolment rules

PREREQUISITE: GEN2041 or BMS2042 or MCB2011 or MOL2011

Overview

Recent technological advances in DNA analysis now allow the rapid and relatively cheap sequencing of entire genomes of individual organisms. These developments have the potential to revolutionize how we identify genes that control both simple and complex traits. Bioinformatic analysis of genomic data will also be highly influential in shaping our view of how organisms adapt to changes in their environment and how over a longer time-scale, traits such as body size and pattern and physiological and behavioral responses can evolve, leading to the rich diversity of life forms seen today. This unit will explore the use of whole-genome techniques to examine gene regulation, identify the genes controlling both simple and complex traits, determine how individuals and populations adapt to selective pressure and piece together the evolutionary changes that have given rise to complex multicellular life. Such information will increasingly be important in the 21st century for sustainable development of human civilization in concert with a healthy planetary environment. You will acquire relevant laboratory and computer-based skills including genetic database analysis and bioinformatics, forward genetic approaches and mapping and identification of genes controlling complex quantitative traits.

Offerings in 2020

Teaching periodCampusMode
First semesterClaytonOn campus
First semester (Fully flex)ClaytonFlexible
Second semesterMalaysiaOn campus

Assessment

  • Practical Topic 1 - DNA sequencing and analysis of herbicide resistance genes in rice
    12%
  • Practical Topic 2 - Population genetics of weedy rice using genotyping-by-sequencing
    14%
  • Practical Topic 3 - RNA-seq analysis of medicinal plants
    14%
  • Mid-semester Test
    15%
  • Examination (2 hours and 10 minutes)
    45%

Learning outcomes

When you finish this unit, you should be able to:

  1. 1

    Describe recent advances in genetic knowledge gained from genomic analysis of species ranging from unicellular to multicellular organisms.

  2. 2

    Explain the philosophy of forward and reverse genetics including genome editing techniques.

  3. 3

    Determine potential applications for genomic techniques in the areas of medical research, agriculture, biotechnology and environmental management;

  4. 4

    Utilise bioinformatic tools to compare DNA and protein sequences, search for genetic variants controlling complex traits, analyse transcriptome data and search for genomic signatures for adaptation;

  5. 5

    Illustrate the processes required to map and identify genes controlling complex biological traits and articulate how forward genetics approaches can be used to determine gene function;

  6. 6

    Collect, analyse, interpret and present genetic data effectively in the preparation of scientific reports;

  7. 7

    Synthesize and critique new discoveries from the scientific literature in genomics.

Workload and teaching

  • Laboratories27 hours
  • Lectures24 hours
  • Teaching approachActive learning
  • 2 one-hour lectures per week
  • One 3-hour practical session per week

Laboratory-based classes will complement lectures. You will carry out molecular genetic experimental techniques to gain laboratory skills and practical experience in extracting and analysing DNA (both in the lab and via use of computer and genetic databases) and demonstrating expression ability of regulatory sequences using reporter gene activity. Short tutorials will be held during these classes to further explain detailed technical concepts. You will be required to undertake and complete a set of problem exercises aimed at developing each student’s ability to connect underlying theory with practical activities; undertake laboratory experimental exercises and present your findings in the form of written practical reports with due reference to recent published literature in the field; analyse DNA sequences using computer assisted analysis of genetic databases.

Learning resources

Required resources

Laboratory coat
Closed shoes

Bring your own device

Where it fits

GEN3040 is part of 10 areas of study in the 2020 handbook.

Contacts

Unit Coordinators
Dr Song Beng Kah
Professor John Bowman
Chief Examiners
Professor John Bowman

Common questions

What are the prerequisites for GEN3040?

GEN3040 has no prerequisites, but enrolment rules apply.

When is GEN3040 offered?

In 2020, GEN3040 runs in Semester 1 and Semester 2 at Clayton and Malaysia.

Does GEN3040 have an exam?

Yes. The exam is worth 45% of the final mark, alongside 4 other tasks.

Which majors and minors include GEN3040?

GEN3040 is part of Biochemistry; Biotechnology; Genetics and genomics; Genomics and bioinformatics; and Microbiology, and 2 other areas of study.

More details

Credit points
6
Level
3
Study level
Undergraduate
Faculty
Faculty of Science
Organisational unit
School of Biological Sciences
Type
Coursework
EFTSL
0.125
Student contribution
SCA Band 2
Study abroad
Not available